Documentation
The BiomolecularStructures package provides several Bioinformatics-related modules which can be used like this:
using BiomolecularStructures.<ModuleName>
e.g.
using BiomolecularStructures.Kabsch
Modules
The BiomolecularStructures package provides several Bioinformatics-related modules:
- WebBLAST - A module to communicate with the NCBI/EBI BLAST servers.
- Kabsch - Superimposing protein structures
- PDB - Utility functions for parsing PDB files
- Plot - Rudimentary plotting of matrices of atomic coordinates
- Mafft - Julia API for multisequence alignment with MAFFT
- Modeller - Functions and scripts to use MODELLER with Julia
- Cluster -
Example pipeline
See src/pipeline.jl
for a sketch of a pipeline that runs several of the package's modules.
A Bioinformatics WS 2014/15 course project by Simon Malischewski, Henning Schumann. Supervision by Prof. Dr. Daniel Hoffmann.